Massively Parallel Sequencing
- Use for the molecular confirmation of a diagnosis of distal arthrogryposis (DA).
- Do not order for the diagnosis of amyoplasia.
- Regions of low coverage and reported variants are confirmed by Sanger sequencing as necessary.
Arthrogryposis multiplex congenita (AMC), or arthrogryposis, is a descriptive term for a group of disorders involving congenital contractures affecting two or more joints in different areas of the body. Arthrogryposis is a consequence of decreased or absent fetal movement (fetal hypokinesia or akinesia). Nongenetic etiologies include fetal crowding, uterine abnormalities, decreased amniotic fluid, and maternal illnesses such as myasthenia gravis or Zika infection. Genetic etiologies account for >50% of cases and include chromosome abnormalities and single gene disorders which affect the central nervous system, muscles, nerves, connective tissue, etc. This group of disorders exhibits both clinical and genetic heterogeneity, making classification and diagnosis difficult, especially in prenatal cases with only approximately 25% of prenatal arthrogryposis diagnosed by ultrasound prior to 24 weeks gestation.
Disease Overview
Distal arthrogryposes (DAs) are a subset of genetic AMCs that involve contractures of the distal parts of the limbs. The contractures are congenital but occur in the absence of primary neurologic and/or muscle disease. The shared findings among DA include a consistent pattern of hand and foot involvement, limited involvement of the proximal joints, and variable expressivity. There are multiple types of DA caused by different genes (genetic heterogeneity).
Symptoms of Arthrogryposis
- Multiple congenital contractures
- Decreased fetal movement/akinesia
- Abnormal position of hands/feet
- Central nervous system (CNS) anomalies
- Developmental delay/intellectual disability
- Seizures
Prevalence
Genetics
Genes
ECEL1, FBN2, MYBPC1, MYH3, MYH8,a NALCN,a PIEZO2,a TNNI2, TNNT3, TPM2
aOne or more exons are not covered by sequencing for the indicated gene (see Limitations).
Inheritance
Variable: dependent on condition (see Genes Tested table)
Test Interpretation
Clinical Sensitivity
Variable: dependent on phenotype/condition
Analytical Sensitivity
For massively parallel sequencing:
Variant Class | Analytical Sensitivity (PPA) Estimatea (%) | Analytical Sensitivity (PPA) 95% Credibility Regiona (%) |
---|---|---|
SNVs |
99.2 |
96.9-99.4 |
Deletions 1-10 bp |
93.8 |
84.3-98.2 |
Deletions 11-44 bp |
99.9 |
87.8-100 |
Insertions 1-10 bp |
94.8 |
86.8-98.5 |
Insertions 11-23 bp |
99.9 |
62.1-100 |
aGenes included on this test are a subset of a larger methods-based validation from which the PPA values are derived. bp, base pairs; PPA, positive percent agreement; SNVs, single nucleotide variants |
Results
Result | Variant(s) Detected | Clinical Significance |
---|---|---|
Positive |
One or more pathogenic variants detected |
Diagnosis of heritable DA confirmed |
Negative |
No pathogenic variants detected |
Diagnosis of heritable DA is less likely but not excluded |
Uncertain |
Variant of uncertain clinical significance |
Unknown if variant is disease causing or benign |
Limitations
- A negative result does not exclude a heritable form of arthrogryposis.
- Diagnostic errors can occur due to rare sequence variations.
- Interpretation of this test result may be impacted if this patient has had an allogeneic stem cell transplantation.
- The following will not be evaluated:
- Variants outside the coding regions and intron-exon boundaries of targeted gene(s)
- Regulatory region and deep intronic variants
- Large deletions/duplications in any of the tested genes
- Noncoding transcripts
- The following exons are not sequenced due to technical limitations of the assay:
- MYH8 (NM_002472) exon 5
- NALCN (NM_001350748) exon 19
- PIEZO2 (NM_022068) exon 4
- The following may not be detected:
- Deletions/duplications/insertions of any size by massively parallel sequencing
- Some variants due to technical limitations in the presence of pseudogenes, repetitive, or homologous regions
- Low-level somatic variants
Genes Tested
Gene | MIM Number | Disorder | Inheritance |
---|---|---|---|
ECEL1 |
605065 |
Distal arthrogryposis, type 5D (DA5D) |
AR |
FBN2 |
121050 |
Distal arthrogryposis, type 9 (DA9) (Contractural arachnodactyly, congenital; CCA) |
AD |
MYBPC1 |
614335 |
Distal arthrogryposis, type 1B (DA1B) |
AD |
614915 |
Lethal congenital contracture syndrome 4 (LCCS4) |
AR |
|
MYH3 |
193700 |
Distal arthrogryposis, type 2A (DA2A) |
AD |
618436 |
Distal arthrogryposis type 2B (DA2B) |
AD |
|
618469 |
Contractures, pterygia, and spondylocarpotarsal fusion syndrome 1B |
AR |
|
178110 |
Contractures, pterygia, and spondylocarpostarsal fusion syndrome 1A (multiple pterygium syndrome) |
AD |
|
MYH8 |
158300 |
Distal arthrogryposis, type 7 (DA7) (trismus-pseudocamptodactyly syndrome) |
AD |
NALCN |
616266 |
Congenital contractures of the limbs and face, hypotonia, and developmental delay (CLIFAHDD) |
AD |
615419 |
Hypotonia, infantile, with psychomotor retardation and characteristic facies 1 (IHPRF1) |
AR |
|
PIEZO2 |
114300 |
Distal arthrogryposis, type 3 (DA3) |
AD |
108145 |
Distal arthrogryposis, type 5 (DA5) |
AD |
|
617146 |
Distal arthrogryposis with impaired proprioception and touch (DAIPT) |
AR |
|
248700 |
Marden-Walker syndrome (MWKS) |
AD |
|
TNNI2 |
601680 |
Distal arthrogryposis, type 2B (DA2B1) |
AD |
TNNT3 |
618435 |
Distal arthrogryposis, type 2B2 |
AD |
TPM2 |
108120 |
Distal arthrogryposis, type 1A (DA1A) |
AD |
108120 |
Distal arthrogryposis, type 2B (DA2B4) |
AD |
|
609285 |
Nemaline myopathy 4, autosomal dominant (NEM4) |
AD |
References
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Niles KM, Blaser S, Shannon P, et al. Fetal arthrogryposis multiplex congenita/fetal akinesia deformation sequence (FADS)-aetiology, diagnosis, and management. Prenat Diagn. 2019;39(9):720-731.
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Dieterich K, Le Tanno P, Kimber E, et al. The diagnostic workup in a patient with AMC: overview of the clinical evaluation and paraclinical analyses with review of the literature. Am J Med Genet C Semin Med Genet. 2019;181(3):337-344.
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19571066
Bamshad M, Van Heest AE, Pleasure D. Arthrogryposis: a review and update. J Bone Joint Surg Am. 2009;91 Suppl 4(Suppl 4):40-46.
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32670090
Desai D, Stiene D, Song T, et al. Distal arthrogryposis and lethal congenital contracture syndrome - an overview. Front Physiol. 2020;11:689.