Massively Parallel Sequencing
Maturity-onset diabetes of the young (MODY) typically occurs in adolescents or young adults <35 years of age. Affected individuals often have mild stable fasting hyperglycemia, weak response to pharmacologic therapy, a personal or family history of neonatal diabetes or neonatal hypoglycemia, and an autosomal dominant pattern of inheritance. Neonatal diabetes (ND) is defined by persistent hyperglycemia in infants <6 months of age. Molecular testing is recommended to guide treatment for MODY and ND.
Disease Overview
Symptoms/Associated Disorders
Maturity-Onset Diabetes of the Young :
- Early-onset diabetes in adolescents or young adults
- Absence of pancreatic islet autoantibodies
- Endogenous insulin production 5 years after onset
- Low insulin requirement
- Lack of ketoacidosis when insulin is omitted
- Lack of obesity or acanthosis nigricans
- Normal triglyceride and high-density lipoprotein levels
Neonatal Diabetes:
- Persistent hyperglycemia (>150-200 mg/dL) in infants <6 months of age
- Mean age of diagnosis: 7 weeks
- May present with intrauterine growth restriction, glucosuria, ketonuria, hyperketonemia, severe dehydration, and failure to thrive
- Decreased fecal elastase and increased fat in stool in infants with pancreatic hypoplasia
Etiology
Pathogenic variants in several overlapping genes for MODY and ND
- Pathogenic variants in GCK (30-50%), HNF1A (30-65%), HNF4A (5-10%), and HNF1B (<5%) are causative for at least 70% of MODY.
- Pathogenic variants in GCK (4%), INS (20%), ABCC8 (19%), and KCNJ11 (30%) are causative for 73% of ND.
Epidemiology/Prevalence
- Prevalence of MODY is estimated at 1-3% in the U.S.
- Prevalence of ND is rare. The incidence has been reported between 1 in 160,000 in Austria to 1 in 215,000 in Slovakia.
Inheritance
- Autosomal dominant (AD) for the main causative genes for MODY: GCK, HNF1A, HNF4A, and HNF1B
- AD and autosomal recessive (AR) for main causative genes for ND
- AD: INS, ABCC8, and KCNJ11
- AR: GCK
Penetrance
Dependent on the causative gene
- Pathogenic HNF1A variants are causative for 30-60% of MODY and have a 63% penetrance by age 25, 79% penetrance by 35, and 96% penetrance by age 55.
- Pathogenic variants in KCNJ11 and ABCC8 have shown reduced penetrance for ND.
Test Description
Clinical Sensitivity
At least 70% for MODY and 73% for ND (see Etiology above)
Limitations
- A negative result does not exclude a diagnosis of MODY or ND.
- Diagnostic errors can occur due to rare sequence variations.
- Interpretation of the test result may be impacted if the patient has had an allogeneic stem cell transplantation.
- The following will not be evaluated:
- Variants outside the coding regions and intron-exon boundaries of targeted genes
- Most regulatory region and deep intronic variants
- Noncoding transcripts
- The following exons are not sequenced due to technical limitations of the assay:
- CEL (NM_001807) 1, 8, 9, 11
- ABCC8 (NM_001351295) partial exon 14 (Chr11:17449973-17450018)
- The following may not be detected:
- Deletions/duplications/insertions of any size by massively parallel sequencing
- Some variants due to technical limitations in the presence of pseudogenes, repetitive, or homologous regions
- Low-level somatic variants
Analytic Sensitivity
For massively parallel sequencing:
Variant Class | Analytic Sensitivity (PPA) Estimatea (%) | Analytic Sensitivity (PPA) 95% Credibility Regiona (%) |
---|---|---|
SNVs |
99.2 |
96.9-99.4 |
Deletions 1-10 bp |
93.8 |
84.3-98.2 |
Deletions 11-44 bp |
99.9 |
87.8-100 |
Insertions 1-10 bp |
94.8 |
86.8-98.5 |
Insertions 11-23 bp |
99.9 |
62.1-100 |
aGenes included on this test are a subset of a larger methods-based validation from which the PPA values are derived. bp, base pairs; PPA, positive percent agreement; SNVs, single nucleotide variants |
Genes Tested
Gene | MIM Number | Disorder | Inheritance |
---|---|---|---|
ABCC8 |
600509 |
NIDDM |
AD |
Diabetes mellitus, permanent neonatal 3, with or without neurologic features |
AD, AR |
||
Diabetes mellitus, transient neonatal 2 |
AD |
||
Hyperinsulinemic hypoglycemia, familial, 1 |
AD, AR |
||
Hypoglycemia of infancy, leucine sensitive |
AD |
||
APPL1 |
604299 |
MODY, type 14 |
AD |
CEL |
114840 |
MODY, type 8 |
AD |
EIF2AK3 |
604032 |
Wolcott-Rallison syndrome |
AR |
FOXP3 |
300292 |
Immunodysregulation, polyendocrinopathy, and enteropathy, X-linked |
XLR |
GATA4 |
600576 |
Neonatal and childhood diabetes |
AD |
GATA6 |
601656 |
Pancreatic agenesis and congenital heart defects |
AD |
GCK |
138079 |
NIDDM, late onset |
AD |
Hyperinsulinemic hypoglycemia, familial, 3 |
AD |
||
MODY, type 2 |
AD |
||
Diabetes mellitus, permanent neonatal 1 |
AR |
||
HNF1A |
142410 |
NIDDM 2 |
AD |
IDDM 20 |
AD |
||
MODY, type 3 |
AD |
||
HNF1B |
189907 |
NIDDM |
AD |
Renal cysts and diabetes syndrome |
AD |
||
HNF4A |
600281 |
NIDDM |
AD |
Fanconi renotubular syndrome 4, with MODY |
AD |
||
MODY, type 1 |
AD |
||
INS |
176730 |
IDDM2 |
AD |
Diabetes mellitus, permanent neonatal |
AD, AR |
||
Hyperproinsulinemia |
AD |
||
MODY, type 10 |
AD |
||
KCNJ11 |
600937 |
Diabetes mellitus, transient neonatal, 3 |
AD |
Diabetes, permanent neonatal 2, with or without neurologic features |
AD |
||
Hyperinsulinemic hypoglycemia, familial 2 |
AR |
||
MODY, type 13 |
AD |
||
NEUROD1 |
601724 |
MODY, type 6 |
AD |
NEUROG3 |
604882 |
Diarrhea 4, malabsorptive, congenital |
AR |
PDX1 |
600733 |
MODY, type 4 |
AD |
Pancreatic agenesis 1 |
AR |
||
RFX6 |
612659 |
Mitchell-Riley syndrome |
AR |
SLC19A2 |
603941 |
Thiamine-responsive megaloblastic anemia syndrome |
AR |
WFS1 |
606201 |
NIDDM |
AD |
Wolfram-like syndrome, AD |
AD |
||
Wolfram syndrome 1 |
AR |
||
ZFP57 |
612192 |
Diabetes mellitus, transient neonatal, 1 |
AD |
NIDDM, noninsulin-dependent diabetes mellitus; IDDM, insulin-dependent diabetes mellitus; XLR, X-linked recessive |
References
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Støy J, Edghill EL, Flanagan SE, et al. Insulin gene mutations as a cause of permanent neonatal diabetes. Proc Natl Acad Sci U S A. 2007;104(38):15040-15044.
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Babenko AP, Polak M, Cavé H, et al. Activating mutations in the ABCC8 gene in neonatal diabetes mellitus. N Engl J Med. 2006;355(5):456-66.
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Ellard S, Flanagan SE, Girard CA, et al. Permanent neonatal diabetes caused by dominant, recessive, or compound heterozygous SUR1 mutations with opposite functional effects. Am J Hum Genet. 2007;81(2):375-382.
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Stanik J, Gasperikova D, Paskova M, et al. Prevalence of permanent neonatal diabetes in Slovakia and successful replacement of insulin with sulfonylurea therapy in KCNJ11 and ABCC8 mutation carriers. J Clin Endocrinol Metab. 2007;92(4):1276-1282.
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19496964
Wiedemann B, Schober E, Waldhoer T, et al. Incidence of neonatal diabetes in Austria–calculation based on the Austrian Diabetes Register. Pediatr Diabetes. 2010;11(1):18-23.
Regions of low coverage and reported variants are confirmed by Sanger sequencing as necessary.