Massively Parallel Sequencing
- Use to confirm a diagnosis of Stickler syndrome or a related disorder
- Regions of low coverage and reported variants are confirmed by Sanger sequencing as necessary
Stickler syndrome and related disorders are a group of inherited conditions characterized by ocular abnormalities, hearing loss, and skeletal or joint problems. Most individuals with Stickler syndrome have a distinct facial appearance with a flattened midface, sometimes with Pierre Robin sequence. The majority of cases of Stickler syndrome are caused by variants in the COL2A1 gene, which codes for type II collagen. Variants in COL2A1 are also associated with a number of related disorders with variable severity, including achondrogenesis type II, spondyloepiphyseal dysplasia congenita, and spondyloperipheral dysplasia. Pathogenic variants in COL11A1 and other collagen genes cause a smaller percentage of Stickler syndrome cases, as well as other disorders with overlapping features such as fibrochondrogenesis and multiple epiphyseal dysplasia. Diagnosis of Stickler syndrome or a related disorder may be suspected based on clinical features, but confirmation of the condition requires genetic testing.
Disease Overview
Symptoms
- Ocular abnormalities (eg, high myopia, vitreous abnormalities, retinal detachment)
- Hearing impairment (both conductive and sensorineural)
- Skeletal abnormalities (eg, early-onset arthritis, short stature, spondyloepiphyseal dysplasia upon radiographic evaluation, scoliosis, or kyphosis)
- Craniofacial features (eg, flat facial profile/midface hypoplasia or cleft palate, sometimes with Pierre Robin sequence)
Genetics
Genes
COL11A1, COL11A2, COL2A1, COL9A1, COL9A2, COL9A3, VCAN
Etiology
Stickler syndrome may be caused by pathogenic variants in the COL2A1, COL11A1, COL11A2, COL9A1, COL9A2, and COL9A3 genes. In some rare families, other unknown genes may be involved. Pathogenic variants in VCAN cause Wagner syndrome, a condition with overlapping ocular symptoms.
Penetrance
100%
Prevalence
1/7,500 to 1/9,000 among newborns
Inheritance
See Genes Tested table below
Test Description
Clinical Sensitivity
Variable, dependent on phenotype/condition
Analytic Sensitivity
For massively parallel sequencing:
Variant Class | Analytic Sensitivity (PPA) Estimatea (%) | Analytic Sensitivity (PPA) 95% Credibility Regiona (%) |
---|---|---|
SNVs |
99.2 |
96.9-99.4 |
Deletions 1-10 bp |
93.8 |
84.3-98.2 |
Deletions 11-44 bp |
99.9 |
87.8-100 |
Insertions 1-10 bp |
94.8 |
86.8-98.5 |
Insertions 11-23 bp |
99.9 |
62.1-100 |
aGenes included on this test are a subset of a larger methods-based validation from which the PPA values are derived. bp, base pairs; PPA, positive percent agreement; SNVs, single nucleotide variants |
Limitations
- A negative result does not exclude a diagnosis of Stickler syndrome or a related disorder.
- Diagnostic errors can occur due to rare sequence variations.
- Interpretation of this test result may be impacted if this patient has had an allogeneic stem cell transplantation.
- The following will not be evaluated:
- Variants outside the coding regions and intron-exon boundaries of targeted gene(s)
- Regulatory region and deep intronic variants
- Noncoding transcripts
- Large deletions/duplications in any of the tested genes (large deletions/duplications account for <1% of causative variants for Stickler syndrome)
- The following may not be detected:
- Deletions/duplications/insertions of any size by massively parallel sequencing
- Some variants, due to technical limitations in the presence of pseudogenes or repetitive or homologous regions
- Low-level somatic variants
Genes Tested
Gene | MIM Number | Associated Disorders | Inheritance |
---|---|---|---|
COL11A1 |
120280 |
Fibrochondrogenesis 1 |
AR |
Marshall syndrome |
AD |
||
Stickler syndrome, type II |
AD |
||
COL11A2 |
120290 |
Fibrochondrogenesis 2 |
AD |
Otospondylomegaepiphyseal dysplasia |
AD |
||
Otospondylomegaepiphyseal dysplasia |
AR |
||
COL2A1 |
120140 |
Legg-Calve-Perthes disease |
AD |
Osteoarthritis with mild chondrodysplasia |
AD |
||
Spondyloperipheral dysplasia |
AD |
||
Epiphyseal dysplasia, multiple, with myopia and conductive deafness |
AD |
||
Spondyloepimetaphyseal dysplasia, Strudwick type |
AD |
||
Stickler syndrome, type I |
AD |
||
Achondrogenesis, type II |
AD |
||
Czech dysplasia |
AD |
||
Stickler syndrome, type I, nonsyndromic ocular |
AD |
||
Spondyloepiphyseal dysplasia, Stanescu type |
AD |
||
Platyspondylic lethal skeletal dysplasia, Torrance type |
AD |
||
Kniest dysplasia |
AD |
||
Spondyloepiphyseal dysplasia congenita |
AD |
||
COL9A1 |
120210 |
Stickler syndrome, type IV |
AR |
COL9A2 |
120260 |
Epiphyseal dysplasia, multiple, type 2 |
AD |
Stickler syndrome, type V |
AR |
||
COL9A3 |
120270 |
Epiphyseal dysplasia, multiple, type 3 |
AD |
VCAN |
118661 |
Wagner vitreoretinopathy |
AD |
AD, autosomal dominant; AR, autosomal recessive |