Biotinidase Deficiency

Last Literature Review: February 2021 Last Update:

Biotinidase deficiency (BTD), also referred to as multiple carboxylase deficiency, is an inherited disorder that affects approximately 1 in 60,000 people and is caused by biallelic pathogenic variants in the BTD gene.  Deficiency in biotinidase enzymatic activity interferes with the body’s ability to recycle the vitamin biotin, resulting primarily in neurologic and dermatologic manifestations. ,  The disorder usually causes no symptoms in the first weeks or months of life,  and early signs and symptoms are frequently nonspecific.  Symptoms can develop once the biotin transferred from mother to child has been depleted. Hearing impairment, vision problems, and developmental delay are largely irreversible once they have occurred, even with biotin therapy. Because early treatment can prevent all symptoms, timely diagnosis is very important. ,  Newborn screening for BTD is currently performed across the United States and in more than 30 other countries.  Confirmatory testing following an abnormal newborn screen for BTD involves serum testing to evaluate biotinidase activity and may include molecular testing of the BTD gene.  Laboratory testing may also be indicated in older patients with symptoms suggestive of the disease who have no record of screening at birth.

Quick Answers for Clinicians

How does biotinidase deficiency manifest clinically?

Clinical presentation can vary significantly in patients with biotinidase deficiency (BTD), even among related individuals.  BTD is classified as either profound or partial, depending on the degree of enzyme activity detected. Patients with profound untreated BTD may suffer from seizures, hypotonia, developmental delay, hearing and vision impairment, alopecia, and ataxia, among other conditions.  Developmental delay and vision or hearing impairment may be permanent if they occur before treatment begins. Left untreated, profound BTD can also result in coma and death. ,  In rare cases, patients with profound deficiency have presented without symptoms.  Patients with partial BTD who do not undergo treatment can be asymptomatic or may suffer from mild forms of the conditions associated with profound deficiency. These mild forms typically occur following stressors such as surgery or infection. 

In addition to newborns with abnormal biotinidase deficiency screening results, in which other populations is biotinidase deficiency testing indicated?

Biotinidase testing is typically performed following an abnormal newborn screening result but may be part of a broader workup in children with clinical characteristics of biotinidase deficiency (BTD).  Testing should also be considered in individuals who manifest clinical symptoms of BTD following stressors such as illness or surgery,  as well as in those with symptoms of the disorder who may not have been screened at birth. On occasion, late-onset BTD in adolescents and adults has been mistaken for multiple sclerosis (MS). Enzyme testing to rule out BTD should be considered in patients with clinical suspicion of MS. 

In the event of inconclusive newborn screening test results for BTD (eg, following a blood transfusion in the neonate), parental testing may be helpful to rule out the disorder. 

How are partial and profound biotinidase deficiency differentiated?

Partial and profound biotinidase deficiency (BTD) are distinguished by the level of enzyme activity detected in serum or plasma. Patients with enzyme activity levels 10-30% of normal are considered to have partial deficiency, whereas those with levels <10% of normal are considered to have profound deficiency.  In addition, specific mutations are causative for either partial or profound BTD [eg, the common c. 1330G>C (p.D444H) pathogenic variant is associated with partial deficiency]. Molecular testing can be helpful to characterize a deficiency as profound or partial. Refer to the Genetic Testing section for additional information.

Can newborn screening test results be used to differentiate partial and profound biotinidase deficiency?

Although specific levels of detected enzymatic activity are included in newborn screening results in some U.S. states, these results should not be used to differentiate between partial and profound biotinidase deficiency (BTD).  False-positive BTD screening results (ie, indicating low levels of enzymatic activity) can occur in premature infants and as a result of specimen mishandling (eg, humidity reduces enzyme activity in samples). Therefore, follow-up testing is necessary in the event of abnormal screening results. 

Indications for Testing

Testing for BTD is included in newborn screening panels throughout the U.S. and in a number of other countries. Newborns with abnormal screening results should undergo further testing of biotinidase enzyme activity to confirm or exclude a diagnosis of BTD. Testing is also warranted in parents of infants who have inconclusive newborn screening results and in older individuals with symptoms that suggest BTD. Refer to the Serum Biotinidase Testing section for more information.

DNA testing for BTD is appropriate to confirm a diagnosis of profound or partial BTD, determine carrier status, and assess relatives of affected individuals when familial variants are known. Refer to the Genetic Testing section for additional testing guidance.

Laboratory Testing

Newborn Screening

Newborn screening for BTD involves the use of direct enzyme assays to assess dried blood spots for biotinidase activity. Traditionally, colorimetric assays have been used, but commercial kits using fluorescence are now available as well.  Some U.S. states simply report positive or negative results, whereas others use an established cutoff value and report the specific levels of enzymatic activity detected.  However, newborn screening tests cannot differentiate between partial and profound deficiency. Follow-up testing is necessary if screening results are abnormal. 

Serum Biotinidase Testing

Serum testing is useful as a follow-up approach to measure biotinidase enzyme activity in newborns with abnormal screening results. Parents of newborns with uncertain screening results should also undergo serum testing, given that BTD is unlikely if parental results are normal.  Biotinidase testing is also appropriate in older patients who present with clinical symptoms suggestive of BTD. 

The biotinidase enzyme is very sensitive to specimen handling; therefore, a control sample from an unrelated individual, collected at the same time as the patient's sample and handled in the same way, is recommended for evaluating the integrity of the sample. This approach helps control for preanalytic variables, such as a compromised sample or mishandling, which might lead to misdiagnosis.  In the case of newborns, testing of parents is generally recommended. 

Serum Test Results Interpretation
Biotinidase Enzyme ActivityInterpretation
<10% of mean normal activityProfound BTD
10-30% of mean normal activityPartial BTD
50% of mean normal activityPatient may be heterozygous for variants causative for profound BTD or homozygous for variant most commonly associated with partial BTD (p.Asp444His); consider molecular testing for variant identification
Source: Strovel, 2017 

It is important to note that metabolic tests, such as urine organic acid analysis using gas chromatography/mass spectrometry, may detect BTD-related biochemical features. However, this testing is not recommended for diagnosis of BTD because results are often normal in patients with BTD.  Furthermore, abnormal metabolic test results, such as increased 3-hydroxyisovalerate levels, are nonspecific. Therefore, in patients with metabolic abnormalities that suggest possible BTD, serum biotinidase activity testing is recommended. 

Genetic Testing

Genetic testing can confirm partial or profound BTD as well as carrier status and has high clinical sensitivity when used in combination with biotinidase enzyme activity testing.

Given the lack of standardization among enzyme assays and reference ranges used by different laboratories, and because specific genetic variants are clearly associated with enzyme deficiency, some groups recommend that molecular testing be performed (after enzymatic testing) in all patients with suspected BTD.  Molecular testing of the BTD gene is used to confirm newborn screening results in some states.  Genetic testing can be especially helpful to distinguish between patients who have partial BTD, which is generally associated with the p.Asp444His variant, and patients who may be heterozygous carriers of variants associated with profound BTD. 

Molecular testing for BTD involves targeted analysis or complete sequencing to detect BTD gene mutations. DNA from dried blood spots used for newborn screening can be analyzed to detect common variants.  When a common variant panel fails to yield definitive results, complete gene sequencing or deletion/duplication testing should be considered. 

Common variants associated with BTD in White individuals include c. 98_104d7i3 (G98del7ins3), c. 1612C>T (p.R538C), c. 1368A>C (p.Q456H), and c. 511G>A (p.A171T:D444H).

ARUP Laboratory Tests

Serum Testing
Molecular Testing


Medical Experts



Nicola Longo, MD, PhD
Professor, Pediatrics; Adjunct Professor of Pathology (Clinical), University of Utah
Chief, Medical Genetics Division; Medical Director, Biochemical Genetics and Newborn Screening, ARUP Laboratories


Marzia Pasquali, PhD, FACMG
Professor of Pathology, Adjunct Professor of Pediatrics, University of Utah School of Medicine
Section Chief, Biochemical Genetics; Medical Director, Biochemical Genetics and Newborn Screening, ARUP Laboratories